Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Gm42545-201ENSMUST00000202755 922 ntBASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smc1aQ9CU62 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smc1aQ9CU62 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Gm38285-201ENSMUST00000192928 922 ntBASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Smc1aQ9CU62 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Smc1aQ9CU62 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Smc1aQ9CU62 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Smc1aQ9CU62 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.06■□□□□ 0.64
Smc1aQ9CU62 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms