Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Gm10013-201ENSMUST00000106074 672 ntBASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Gm18101-201ENSMUST00000215769 548 ntBASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Gm18032-201ENSMUST00000222541 538 ntBASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav6d-4Q5R1I0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Gm18958-201ENSMUST00000174258 762 ntBASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav6d-4Q5R1I0 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6d-4Q5R1I0 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Rarb-207ENSMUST00000225921 2756 ntBASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Gm6659-201ENSMUST00000174752 547 ntBASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Gm7213-201ENSMUST00000215977 950 ntBASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Trav6d-4Q5R1I0 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6d-4Q5R1I0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms