Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3bQ3ULL6 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3bQ3ULL6 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Gm7791-201ENSMUST00000219066 539 ntBASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Il3ra-202ENSMUST00000223589 738 ntBASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3bQ3ULL6 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Upf3bQ3ULL6 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf3bQ3ULL6 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.27■□□□□ 0.51
Upf3bQ3ULL6 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf3bQ3ULL6 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Upf3bQ3ULL6 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Upf3bQ3ULL6 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms