Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1bO55017 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.47■□□□□ 0.23
Cacna1bO55017 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.47■□□□□ 0.23
Cacna1bO55017 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cacna1bO55017 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1bO55017 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC16.46■□□□□ 0.23
Cacna1bO55017 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.46■□□□□ 0.23
Cacna1bO55017 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1bO55017 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.46■□□□□ 0.23
Cacna1bO55017 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1bO55017 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cacna1bO55017 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cacna1bO55017 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Cacna1bO55017 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1bO55017 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
Cacna1bO55017 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.45■□□□□ 0.22
Cacna1bO55017 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC16.45■□□□□ 0.22
Cacna1bO55017 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Idnk-204ENSMUST00000226010 1898 ntBASIC16.45■□□□□ 0.22
Cacna1bO55017 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.45■□□□□ 0.22
Cacna1bO55017 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cacna1bO55017 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.45■□□□□ 0.22
Cacna1bO55017 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm12644-201ENSMUST00000119935 606 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44357-201ENSMUST00000195897 142 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm19658-201ENSMUST00000196231 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44367-201ENSMUST00000196836 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44350-201ENSMUST00000197197 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44390-201ENSMUST00000197533 144 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44313-201ENSMUST00000198018 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44486-201ENSMUST00000198508 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44454-201ENSMUST00000198541 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44314-201ENSMUST00000199263 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44394-201ENSMUST00000199558 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44484-201ENSMUST00000199873 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44466-201ENSMUST00000200264 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Gm44359-201ENSMUST00000200671 138 ntBASIC16.44■□□□□ 0.22
Cacna1bO55017 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Cacna1bO55017 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cacna1bO55017 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Cacna1bO55017 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC16.43■□□□□ 0.22
Cacna1bO55017 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cacna1bO55017 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cacna1bO55017 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Cacna1bO55017 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cacna1bO55017 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.42■□□□□ 0.22
Cacna1bO55017 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.42■□□□□ 0.22
Cacna1bO55017 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cacna1bO55017 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cacna1bO55017 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC16.42■□□□□ 0.22
Cacna1bO55017 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cacna1bO55017 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cacna1bO55017 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cacna1bO55017 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.42■□□□□ 0.22
Cacna1bO55017 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms