Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ELOCP3-201ENST00000439303 348 ntBASIC6.65□□□□□ -1.34
MSX2P35548 CICP10-201ENST00000439497 198 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 AP002371.1-201ENST00000463604 433 ntBASIC6.65□□□□□ -1.34
MSX2P35548 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 AC084024.1-201ENST00000476186 621 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 RPL23AP8-201ENST00000479812 475 ntBASIC6.65□□□□□ -1.34
MSX2P35548 RPL23AP73-201ENST00000492507 471 ntBASIC6.65□□□□□ -1.34
MSX2P35548 MTND1P22-201ENST00000510572 951 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC111000.1-201ENST00000514545 713 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 AC021451.1-201ENST00000523498 1129 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC130364.2-201ENST00000528639 604 ntBASIC6.65□□□□□ -1.34
MSX2P35548 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC6.65□□□□□ -1.34
MSX2P35548 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX2P35548 OR4N3P-201ENST00000559395 818 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC092133.1-201ENST00000565828 719 ntBASIC6.65□□□□□ -1.34
MSX2P35548 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX2P35548 AC022239.4-201ENST00000602626 504 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC108451.2-201ENST00000603875 538 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC069304.3-201ENST00000603938 1084 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AL049844.2-201ENST00000604280 628 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AL022161.1-201ENST00000604390 213 ntBASIC6.65□□□□□ -1.34
MSX2P35548 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 AL445528.2-201ENST00000620582 470 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC135068.4-201ENST00000622949 925 ntBASIC6.65□□□□□ -1.34
MSX2P35548 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 AL590396.4-201ENST00000636779 956 ntBASIC6.65□□□□□ -1.34
MSX2P35548 AC008691.1-209ENST00000642094 814 ntBASIC6.65□□□□□ -1.34
MSX2P35548 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX2P35548 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.65□□□□□ -1.35
MSX2P35548 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.65□□□□□ -1.35
MSX2P35548 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSX2P35548 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC6.65□□□□□ -1.35
MSX2P35548 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.65□□□□□ -1.35
MSX2P35548 CBWD6-203ENST00000456520 1608 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSX2P35548 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 AC009120.2-204ENST00000621548 2032 ntBASIC6.64□□□□□ -1.35
MSX2P35548 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
MSX2P35548 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 RNA5SP172-201ENST00000365061 118 ntBASIC6.64□□□□□ -1.35
MSX2P35548 MIR614-201ENST00000385082 90 ntBASIC6.64□□□□□ -1.35
MSX2P35548 IGKV6D-41-201ENST00000390271 371 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
MSX2P35548 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 MIR541-201ENST00000401360 84 ntBASIC6.64□□□□□ -1.35
MSX2P35548 IGBP1-AS2-201ENST00000403371 513 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 IGLC6-201ENST00000410078 317 ntBASIC6.64□□□□□ -1.35
MSX2P35548 MED15P8-201ENST00000411601 545 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 TMA16P2-201ENST00000413187 601 ntBASIC6.64□□□□□ -1.35
MSX2P35548 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 AL353615.1-201ENST00000450850 390 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 RSU1P1-201ENST00000453416 441 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AC139769.1-201ENST00000471224 1001 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 TMEM196-205ENST00000493519 687 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 RN7SL124P-201ENST00000498656 285 ntBASIC6.64□□□□□ -1.35
MSX2P35548 SELENOP-204ENST00000507920 786 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 EEF1B2P2-201ENST00000519625 676 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 AP006437.1-202ENST00000530327 933 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AP000757.2-201ENST00000531850 557 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC6.64□□□□□ -1.35
MSX2P35548 WASF2-201ENST00000536657 1083 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 AC091180.5-201ENST00000576461 382 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 ZNF85-206ENST00000596476 1259 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX2P35548 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX2P35548 AC068790.2-201ENST00000602601 557 ntBASIC6.64□□□□□ -1.35
MSX2P35548 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.64□□□□□ -1.35
MSX2P35548 AC010719.1-201ENST00000602992 747 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AL137190.1-201ENST00000603288 282 ntBASIC6.64□□□□□ -1.35
MSX2P35548 RN7SL760P-201ENST00000607344 270 ntBASIC6.64□□□□□ -1.35
MSX2P35548 Metazoa_SRP.124-201ENST00000610352 345 ntBASIC6.64□□□□□ -1.35
MSX2P35548 MIR6872-201ENST00000612981 62 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AC006335.3-201ENST00000613408 292 ntBASIC6.64□□□□□ -1.35
MSX2P35548 MIR6829-201ENST00000620375 67 ntBASIC6.64□□□□□ -1.35
MSX2P35548 AP003485.2-201ENST00000623636 610 ntBASIC6.64□□□□□ -1.35
MSX2P35548 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSX2P35548 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
MSX2P35548 EEF1A1P22-201ENST00000559385 1380 ntBASIC6.64□□□□□ -1.35
MSX2P35548 VEZF1P1-201ENST00000423931 1541 ntBASIC6.64□□□□□ -1.35
MSX2P35548 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms