Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Vps28Q9D1C8 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.59■□□□□ 0.41
Vps28Q9D1C8 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Vps28Q9D1C8 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps28Q9D1C8 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps28Q9D1C8 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps28Q9D1C8 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.58■□□□□ 0.41
Vps28Q9D1C8 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Vps28Q9D1C8 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Gm7889-201ENSMUST00000185591 958 ntBASIC17.58■□□□□ 0.4
Vps28Q9D1C8 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Vps28Q9D1C8 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Gm37025-201ENSMUST00000195159 829 ntBASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Vps28Q9D1C8 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Vps28Q9D1C8 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Gm7791-201ENSMUST00000219066 539 ntBASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.55■□□□□ 0.4
Vps28Q9D1C8 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Gm9731-201ENSMUST00000209480 747 ntBASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Vps28Q9D1C8 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms