Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.02■□□□□ 0.48
Ddx56Q9D0R4 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ddx56Q9D0R4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Ddx56Q9D0R4 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ddx56Q9D0R4 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
Ddx56Q9D0R4 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18■□□□□ 0.47
Ddx56Q9D0R4 Arhgef33-211ENSMUST00000225658 473 ntBASIC18■□□□□ 0.47
Ddx56Q9D0R4 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ddx56Q9D0R4 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.99■□□□□ 0.47
Ddx56Q9D0R4 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Gm9731-201ENSMUST00000209480 747 ntBASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.98■□□□□ 0.47
Ddx56Q9D0R4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Gm7638-201ENSMUST00000121348 967 ntBASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Odf3b-204ENSMUST00000227834 930 ntBASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ddx56Q9D0R4 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms