Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Lsm1Q8VC85 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Lsm1Q8VC85 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Lsm1Q8VC85 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.46■□□□□ 0.23
Lsm1Q8VC85 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Lsm1Q8VC85 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Gm4974-201ENSMUST00000209974 875 ntBASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Lsm1Q8VC85 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Lsm1Q8VC85 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Lsm1Q8VC85 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Gm12441-201ENSMUST00000121806 588 ntBASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Gm12382-201ENSMUST00000122005 922 ntBASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Lsm1Q8VC85 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Gm10517-202ENSMUST00000192970 758 ntBASIC16.41■□□□□ 0.22
Lsm1Q8VC85 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Lsm1Q8VC85 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Lsm1Q8VC85 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms