Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.32■□□□□ 0.36
Six4Q61321 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Six4Q61321 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Six4Q61321 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Six4Q61321 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.31■□□□□ 0.36
Six4Q61321 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Six4Q61321 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC17.3■□□□□ 0.36
Six4Q61321 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Six4Q61321 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Six4Q61321 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Six4Q61321 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.29■□□□□ 0.36
Six4Q61321 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.29■□□□□ 0.36
Six4Q61321 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.29■□□□□ 0.36
Six4Q61321 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.29■□□□□ 0.36
Six4Q61321 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Six4Q61321 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Six4Q61321 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Six4Q61321 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Six4Q61321 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.28■□□□□ 0.36
Six4Q61321 Gm27000-201ENSMUST00000182943 842 ntBASIC17.28■□□□□ 0.36
Six4Q61321 Gm7889-201ENSMUST00000185591 958 ntBASIC17.28■□□□□ 0.36
Six4Q61321 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.28■□□□□ 0.36
Six4Q61321 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Six4Q61321 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.28■□□□□ 0.36
Six4Q61321 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Six4Q61321 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Six4Q61321 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Six4Q61321 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.27■□□□□ 0.36
Six4Q61321 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Six4Q61321 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms