Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CtcfQ61164 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.9■□□□□ 0.62
CtcfQ61164 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC18.9■□□□□ 0.62
CtcfQ61164 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.9■□□□□ 0.62
CtcfQ61164 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CtcfQ61164 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CtcfQ61164 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.9■□□□□ 0.62
CtcfQ61164 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CtcfQ61164 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CtcfQ61164 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CtcfQ61164 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.89■□□□□ 0.61
CtcfQ61164 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.89■□□□□ 0.61
CtcfQ61164 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CtcfQ61164 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.89■□□□□ 0.61
CtcfQ61164 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
CtcfQ61164 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.89■□□□□ 0.61
CtcfQ61164 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CtcfQ61164 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Gm27275-201ENSMUST00000184318 272 ntBASIC18.88■□□□□ 0.61
CtcfQ61164 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CtcfQ61164 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CtcfQ61164 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CtcfQ61164 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CtcfQ61164 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CtcfQ61164 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
CtcfQ61164 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Gm11249-201ENSMUST00000117071 859 ntBASIC18.86■□□□□ 0.61
CtcfQ61164 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.86■□□□□ 0.61
CtcfQ61164 Gm4968-201ENSMUST00000071458 858 ntBASIC18.86■□□□□ 0.61
CtcfQ61164 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.86■□□□□ 0.61
CtcfQ61164 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CtcfQ61164 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CtcfQ61164 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CtcfQ61164 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.85■□□□□ 0.61
CtcfQ61164 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CtcfQ61164 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms