Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf3bQ3ULL6 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Gm17661-201ENSMUST00000170317 270 ntBASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf3bQ3ULL6 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Gm9731-201ENSMUST00000209480 747 ntBASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Upf3bQ3ULL6 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Upf3bQ3ULL6 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Upf3bQ3ULL6 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
Upf3bQ3ULL6 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.33■□□□□ 0.53
Upf3bQ3ULL6 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.33■□□□□ 0.53
Upf3bQ3ULL6 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Mir6982-201ENSMUST00000184354 68 ntBASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3bQ3ULL6 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Gm30025-201ENSMUST00000218555 728 ntBASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Upf3bQ3ULL6 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Upf3bQ3ULL6 Gm27463-201ENSMUST00000183569 57 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms