Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Gm37292-201ENSMUST00000192062 758 ntBASIC20.2■□□□□ 0.82
Limch1Q3UH68 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.2■□□□□ 0.82
Limch1Q3UH68 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Limch1Q3UH68 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Limch1Q3UH68 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.18■□□□□ 0.82
Limch1Q3UH68 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Odf3b-204ENSMUST00000227834 930 ntBASIC20.18■□□□□ 0.82
Limch1Q3UH68 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Limch1Q3UH68 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.18■□□□□ 0.82
Limch1Q3UH68 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.17■□□□□ 0.82
Limch1Q3UH68 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Limch1Q3UH68 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.16■□□□□ 0.82
Limch1Q3UH68 Gm13559-201ENSMUST00000120476 863 ntBASIC20.16■□□□□ 0.82
Limch1Q3UH68 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
Limch1Q3UH68 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Timm23-208ENSMUST00000226683 750 ntBASIC20.15■□□□□ 0.82
Limch1Q3UH68 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.15■□□□□ 0.82
Limch1Q3UH68 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.15■□□□□ 0.82
Limch1Q3UH68 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms