Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.83□□□□□ -0.04
Nkx3-1P97436 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Idnk-204ENSMUST00000226010 1898 ntBASIC14.82□□□□□ -0.04
Nkx3-1P97436 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Nkx3-1P97436 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nkx3-1P97436 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Gm44832-201ENSMUST00000208849 2303 ntBASIC14.81□□□□□ -0.04
Nkx3-1P97436 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Gm17807-201ENSMUST00000186869 298 ntBASIC14.81□□□□□ -0.04
Nkx3-1P97436 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nkx3-1P97436 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.8□□□□□ -0.04
Nkx3-1P97436 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.8□□□□□ -0.04
Nkx3-1P97436 Gm17971-201ENSMUST00000190239 806 ntBASIC14.8□□□□□ -0.04
Nkx3-1P97436 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC14.8□□□□□ -0.04
Nkx3-1P97436 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nkx3-1P97436 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Gm5953-201ENSMUST00000220644 2616 ntBASIC14.79□□□□□ -0.04
Nkx3-1P97436 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Gm11950-201ENSMUST00000121615 838 ntBASIC14.79□□□□□ -0.04
Nkx3-1P97436 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 AC130713.1-201ENSMUST00000228853 1096 ntBASIC14.79□□□□□ -0.04
Nkx3-1P97436 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Nkx3-1P97436 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.79□□□□□ -0.04
Nkx3-1P97436 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms