Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb1P63158 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC18.88■□□□□ 0.61
Hmgb1P63158 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.87■□□□□ 0.61
Hmgb1P63158 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Hmgb1P63158 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Hmgb1P63158 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Hmgb1P63158 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.86■□□□□ 0.61
Hmgb1P63158 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Gm12382-201ENSMUST00000122005 922 ntBASIC18.86■□□□□ 0.61
Hmgb1P63158 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.86■□□□□ 0.61
Hmgb1P63158 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Gm37292-201ENSMUST00000192062 758 ntBASIC18.86■□□□□ 0.61
Hmgb1P63158 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.86■□□□□ 0.61
Hmgb1P63158 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Hmgb1P63158 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Hmgb1P63158 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Hmgb1P63158 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Hmgb1P63158 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.85■□□□□ 0.61
Hmgb1P63158 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.85■□□□□ 0.61
Hmgb1P63158 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Hmgb1P63158 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.85■□□□□ 0.61
Hmgb1P63158 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Hmgb1P63158 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.84■□□□□ 0.61
Hmgb1P63158 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Hmgb1P63158 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.83■□□□□ 0.61
Hmgb1P63158 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb1P63158 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Hmgb1P63158 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.83■□□□□ 0.6
Hmgb1P63158 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Hmgb1P63158 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.83■□□□□ 0.6
Hmgb1P63158 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Hmgb1P63158 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.82■□□□□ 0.6
Hmgb1P63158 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.82■□□□□ 0.6
Hmgb1P63158 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb1P63158 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb1P63158 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.81■□□□□ 0.6
Hmgb1P63158 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb1P63158 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms