Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
Col1a1P11087 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC20.08■□□□□ 0.81
Col1a1P11087 AC153794.1-201ENSMUST00000169148 126 ntBASIC20.08■□□□□ 0.81
Col1a1P11087 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col1a1P11087 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col1a1P11087 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
Col1a1P11087 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
Col1a1P11087 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col1a1P11087 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col1a1P11087 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Col1a1P11087 Gm13312-201ENSMUST00000119631 718 ntBASIC20.07■□□□□ 0.8
Col1a1P11087 Gm1818-201ENSMUST00000169406 1184 ntBASIC20.07■□□□□ 0.8
Col1a1P11087 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Gm44450-201ENSMUST00000199528 114 ntBASIC20.07■□□□□ 0.8
Col1a1P11087 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.07■□□□□ 0.8
Col1a1P11087 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Col1a1P11087 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col1a1P11087 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC20.06■□□□□ 0.8
Col1a1P11087 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC20.06■□□□□ 0.8
Col1a1P11087 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col1a1P11087 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col1a1P11087 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Gm29707-201ENSMUST00000196325 491 ntBASIC20.05■□□□□ 0.8
Col1a1P11087 AC138767.1-201ENSMUST00000222661 415 ntBASIC20.05■□□□□ 0.8
Col1a1P11087 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
Col1a1P11087 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col1a1P11087 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC20.04■□□□□ 0.8
Col1a1P11087 Vti1a-206ENSMUST00000225529 1244 ntBASIC20.04■□□□□ 0.8
Col1a1P11087 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col1a1P11087 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC20.03■□□□□ 0.8
Col1a1P11087 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Col1a1P11087 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.03■□□□□ 0.8
Col1a1P11087 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Col1a1P11087 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col1a1P11087 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.02■□□□□ 0.8
Col1a1P11087 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Col1a1P11087 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC20.02■□□□□ 0.8
Col1a1P11087 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
Col1a1P11087 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC20.02■□□□□ 0.8
Col1a1P11087 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col1a1P11087 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC20.02■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms