Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.8■□□□□ 0.28
Chd3B1AR17 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Chd3B1AR17 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Gm7213-201ENSMUST00000215977 950 ntBASIC16.8■□□□□ 0.28
Chd3B1AR17 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Chd3B1AR17 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Chd3B1AR17 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.79■□□□□ 0.28
Chd3B1AR17 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.79■□□□□ 0.28
Chd3B1AR17 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Chd3B1AR17 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Chd3B1AR17 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.79■□□□□ 0.28
Chd3B1AR17 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC16.79■□□□□ 0.28
Chd3B1AR17 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC16.79■□□□□ 0.28
Chd3B1AR17 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Chd3B1AR17 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Chd3B1AR17 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Chd3B1AR17 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Mir5130-201ENSMUST00000175160 84 ntBASIC16.78■□□□□ 0.28
Chd3B1AR17 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Chd3B1AR17 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Chd3B1AR17 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Chd3B1AR17 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.78■□□□□ 0.28
Chd3B1AR17 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
Chd3B1AR17 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Chd3B1AR17 Gm7284-201ENSMUST00000131667 944 ntBASIC16.77■□□□□ 0.28
Chd3B1AR17 Gm25016-201ENSMUST00000158399 131 ntBASIC16.77■□□□□ 0.28
Chd3B1AR17 Gm33142-201ENSMUST00000193913 867 ntBASIC16.77■□□□□ 0.28
Chd3B1AR17 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Chd3B1AR17 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Chd3B1AR17 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
Chd3B1AR17 Gm11860-201ENSMUST00000122346 1010 ntBASIC16.77■□□□□ 0.27
Chd3B1AR17 Gm18421-201ENSMUST00000204122 625 ntBASIC16.77■□□□□ 0.27
Chd3B1AR17 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chd3B1AR17 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chd3B1AR17 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC16.77■□□□□ 0.27
Chd3B1AR17 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Chd3B1AR17 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC16.76■□□□□ 0.27
Chd3B1AR17 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Chd3B1AR17 Gm37722-201ENSMUST00000193757 208 ntBASIC16.76■□□□□ 0.27
Chd3B1AR17 Gm21362-201ENSMUST00000194272 928 ntBASIC16.76■□□□□ 0.27
Chd3B1AR17 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Chd3B1AR17 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Chd3B1AR17 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Chd3B1AR17 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd3B1AR17 Phf7-203ENSMUST00000226565 1971 ntBASIC16.76■□□□□ 0.27
Chd3B1AR17 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd3B1AR17 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd3B1AR17 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
Chd3B1AR17 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
Chd3B1AR17 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd3B1AR17 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms