Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Pcdhgb8A0A140LI48 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Pcdhgb8A0A140LI48 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm5643-201ENSMUST00000117081 966 ntBASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm22325-201ENSMUST00000158904 308 ntBASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm9194-201ENSMUST00000220749 1447 ntBASIC15.51■□□□□ 0.07
Pcdhgb8A0A140LI48 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm2399-201ENSMUST00000104944 225 ntBASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Pcdhgb8A0A140LI48 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Pcdhgb8A0A140LI48 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Flg-201ENSMUST00000050758 1488 ntBASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Gm15847-201ENSMUST00000121417 1065 ntBASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Pcdhgb8A0A140LI48 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Pcdhgb8A0A140LI48 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Pcdhgb8A0A140LI48 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Pcdhgb8A0A140LI48 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Pcdhgb8A0A140LI48 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms