Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gm10566-201ENSMUST00000086739 996 ntBASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim54Q9ERP3 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.61■□□□□ 0.57
Trim54Q9ERP3 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.6■□□□□ 0.57
Trim54Q9ERP3 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim54Q9ERP3 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Gm9103-201ENSMUST00000119371 405 ntBASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Gm9013-201ENSMUST00000132939 882 ntBASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trim54Q9ERP3 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Trim54Q9ERP3 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Mir8112-201ENSMUST00000184382 131 ntBASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Gm27704-201ENSMUST00000185094 107 ntBASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Gm29518-201ENSMUST00000190858 372 ntBASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim54Q9ERP3 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim54Q9ERP3 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms