Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Gm13186-201ENSMUST00000118031 316 ntBASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Gm13616-201ENSMUST00000120600 222 ntBASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 AC174742.1-201ENSMUST00000218272 304 ntBASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Upf1Q9EPU0 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Upf1Q9EPU0 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Upf1Q9EPU0 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Upf1Q9EPU0 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Upf1Q9EPU0 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Upf1Q9EPU0 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Gm11424-201ENSMUST00000121929 829 ntBASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Upf1Q9EPU0 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Gm25745-201ENSMUST00000174945 133 ntBASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.54■□□□□ 0.72
Upf1Q9EPU0 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 AC154757.1-201ENSMUST00000228289 336 ntBASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Upf1Q9EPU0 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Phf7-203ENSMUST00000226565 1971 ntBASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Mir7023-201ENSMUST00000185093 64 ntBASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.53■□□□□ 0.72
Upf1Q9EPU0 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC19.53■□□□□ 0.72
Upf1Q9EPU0 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms