Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cdk5rap3Q99LM2 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Gm6576-201ENSMUST00000169678 883 ntBASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Alkbh1-212ENSMUST00000185301 408 ntBASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cdk5rap3Q99LM2 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cdk5rap3Q99LM2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cdk5rap3Q99LM2 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Gm12896-201ENSMUST00000118430 226 ntBASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cdk5rap3Q99LM2 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.81■□□□□ 0.44
Cdk5rap3Q99LM2 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Gm11249-201ENSMUST00000117071 859 ntBASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Cdk5rap3Q99LM2 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms