Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clp1Q99LI9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clp1Q99LI9 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Clp1Q99LI9 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clp1Q99LI9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clp1Q99LI9 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Clp1Q99LI9 Zkscan4-202ENSMUST00000225845 1506 ntBASIC18.14■□□□□ 0.49
Clp1Q99LI9 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.14■□□□□ 0.49
Clp1Q99LI9 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.14■□□□□ 0.49
Clp1Q99LI9 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Clp1Q99LI9 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Gm13186-201ENSMUST00000118031 316 ntBASIC18.13■□□□□ 0.49
Clp1Q99LI9 Gm15372-201ENSMUST00000120729 834 ntBASIC18.13■□□□□ 0.49
Clp1Q99LI9 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC18.13■□□□□ 0.49
Clp1Q99LI9 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.13■□□□□ 0.49
Clp1Q99LI9 Gm27000-201ENSMUST00000182943 842 ntBASIC18.13■□□□□ 0.49
Clp1Q99LI9 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Clp1Q99LI9 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.12■□□□□ 0.49
Clp1Q99LI9 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
Clp1Q99LI9 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Gm5867-201ENSMUST00000063197 592 ntBASIC18.11■□□□□ 0.49
Clp1Q99LI9 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Clp1Q99LI9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clp1Q99LI9 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clp1Q99LI9 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Clp1Q99LI9 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms