Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Gm42545-201ENSMUST00000202755 922 ntBASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps53Q8CCB4 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Odf3b-204ENSMUST00000227834 930 ntBASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Gm45560-201ENSMUST00000211492 1472 ntBASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Vps53Q8CCB4 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Vps53Q8CCB4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Gm13559-201ENSMUST00000120476 863 ntBASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Vps53Q8CCB4 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Timm23-208ENSMUST00000226683 750 ntBASIC20■□□□□ 0.79
Vps53Q8CCB4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Vps53Q8CCB4 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
Vps53Q8CCB4 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Gm37292-201ENSMUST00000192062 758 ntBASIC19.99■□□□□ 0.79
Vps53Q8CCB4 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Vps53Q8CCB4 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Gm11539-201ENSMUST00000119837 557 ntBASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Gm13436-201ENSMUST00000120418 567 ntBASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC19.98■□□□□ 0.79
Vps53Q8CCB4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms