Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Gm45058-201ENSMUST00000205810 766 ntBASIC20.32■□□□□ 0.84
Trim56Q80VI1 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trim56Q80VI1 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trim56Q80VI1 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trim56Q80VI1 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Mir5130-201ENSMUST00000175160 84 ntBASIC20.29■□□□□ 0.84
Trim56Q80VI1 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.29■□□□□ 0.84
Trim56Q80VI1 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.29■□□□□ 0.84
Trim56Q80VI1 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim56Q80VI1 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim56Q80VI1 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.27■□□□□ 0.84
Trim56Q80VI1 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim56Q80VI1 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Gm16061-201ENSMUST00000122167 857 ntBASIC20.27■□□□□ 0.84
Trim56Q80VI1 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim56Q80VI1 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Trim56Q80VI1 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim56Q80VI1 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim56Q80VI1 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Trim56Q80VI1 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trim56Q80VI1 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Gm27000-201ENSMUST00000182943 842 ntBASIC20.26■□□□□ 0.83
Trim56Q80VI1 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim56Q80VI1 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Trim56Q80VI1 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.25■□□□□ 0.83
Trim56Q80VI1 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim56Q80VI1 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim56Q80VI1 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Trim56Q80VI1 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms