Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm715-201ENSMUST00000117865 831 ntBASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Sh3rf1Q69ZI1 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.44■□□□□ 0.38
Sh3rf1Q69ZI1 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Gm15378-201ENSMUST00000121894 207 ntBASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Gm13158-201ENSMUST00000122007 736 ntBASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sh3rf1Q69ZI1 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sh3rf1Q69ZI1 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Gm13836-201ENSMUST00000121159 501 ntBASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sh3rf1Q69ZI1 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sh3rf1Q69ZI1 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms