Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Mir8112-201ENSMUST00000184382 131 ntBASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col28a1Q2UY11 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col28a1Q2UY11 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 AC125311.2-201ENSMUST00000227477 1940 ntBASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Gm13216-201ENSMUST00000117145 591 ntBASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Trmt13-210ENSMUST00000198454 880 ntBASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col28a1Q2UY11 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col28a1Q2UY11 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Gm44878-201ENSMUST00000205812 1295 ntBASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col28a1Q2UY11 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col28a1Q2UY11 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col28a1Q2UY11 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms