Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Nkx3-1P97436 Grk6-206ENSMUST00000224995 2971 ntBASIC14.86□□□□□ -0.03
Nkx3-1P97436 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Gm17808-201ENSMUST00000200859 894 ntBASIC14.86□□□□□ -0.03
Nkx3-1P97436 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Gm45141-201ENSMUST00000206502 1888 ntBASIC14.86□□□□□ -0.03
Nkx3-1P97436 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Nkx3-1P97436 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Gm26039-201ENSMUST00000158152 144 ntBASIC14.85□□□□□ -0.03
Nkx3-1P97436 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC14.85□□□□□ -0.03
Nkx3-1P97436 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gm14464-201ENSMUST00000119658 1254 ntBASIC14.84□□□□□ -0.03
Nkx3-1P97436 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gm3272-201ENSMUST00000181181 1229 ntBASIC14.84□□□□□ -0.03
Nkx3-1P97436 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gm10566-201ENSMUST00000086739 996 ntBASIC14.84□□□□□ -0.03
Nkx3-1P97436 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Nkx3-1P97436 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Nkx3-1P97436 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Nkx3-1P97436 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Nkx3-1P97436 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.83□□□□□ -0.04
Nkx3-1P97436 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC14.83□□□□□ -0.04
Nkx3-1P97436 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms