Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.07■□□□□ 0.32
Shox2P70390 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Shox2P70390 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Shox2P70390 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.07■□□□□ 0.32
Shox2P70390 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Shox2P70390 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Shox2P70390 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Shox2P70390 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Shox2P70390 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Shox2P70390 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.06■□□□□ 0.32
Shox2P70390 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
Shox2P70390 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Shox2P70390 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.05■□□□□ 0.32
Shox2P70390 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Mir7075-201ENSMUST00000184187 82 ntBASIC17.05■□□□□ 0.32
Shox2P70390 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.05■□□□□ 0.32
Shox2P70390 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
Shox2P70390 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Shox2P70390 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Shox2P70390 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.04■□□□□ 0.32
Shox2P70390 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Shox2P70390 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.04■□□□□ 0.32
Shox2P70390 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Shox2P70390 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.04■□□□□ 0.32
Shox2P70390 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Shox2P70390 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Shox2P70390 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.03■□□□□ 0.32
Shox2P70390 Gm45102-201ENSMUST00000207427 857 ntBASIC17.03■□□□□ 0.32
Shox2P70390 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC17.03■□□□□ 0.32
Shox2P70390 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms