Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC13.38□□□□□ -0.27
Hoxd3P09027 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC13.38□□□□□ -0.27
Hoxd3P09027 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Gm37025-201ENSMUST00000195159 829 ntBASIC13.38□□□□□ -0.27
Hoxd3P09027 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Gm25007-201ENSMUST00000083808 133 ntBASIC13.38□□□□□ -0.27
Hoxd3P09027 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC13.38□□□□□ -0.27
Hoxd3P09027 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Hoxd3P09027 Gm44832-201ENSMUST00000208849 2303 ntBASIC13.38□□□□□ -0.27
Hoxd3P09027 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Hoxd3P09027 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Gm42900-201ENSMUST00000197184 2167 ntBASIC13.37□□□□□ -0.27
Hoxd3P09027 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Hoxd3P09027 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Hoxd3P09027 Dmtn-207ENSMUST00000228001 2437 ntBASIC13.37□□□□□ -0.27
Hoxd3P09027 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Gm45058-201ENSMUST00000205810 766 ntBASIC13.36□□□□□ -0.27
Hoxd3P09027 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC13.36□□□□□ -0.27
Hoxd3P09027 Gm7791-201ENSMUST00000219066 539 ntBASIC13.36□□□□□ -0.27
Hoxd3P09027 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hoxd3P09027 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Mir5130-201ENSMUST00000175160 84 ntBASIC13.35□□□□□ -0.27
Hoxd3P09027 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Gm9731-201ENSMUST00000209480 747 ntBASIC13.35□□□□□ -0.27
Hoxd3P09027 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hoxd3P09027 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hoxd3P09027 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC13.35□□□□□ -0.27
Hoxd3P09027 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hoxd3P09027 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hoxd3P09027 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC13.34□□□□□ -0.27
Hoxd3P09027 Mir8112-201ENSMUST00000184382 131 ntBASIC13.34□□□□□ -0.27
Hoxd3P09027 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.34□□□□□ -0.27
Hoxd3P09027 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC13.34□□□□□ -0.27
Hoxd3P09027 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hoxd3P09027 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms