Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Hmgb3O54879 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Hmgb3O54879 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Hmgb3O54879 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC14.32□□□□□ -0.12
Hmgb3O54879 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Hmgb3O54879 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
Hmgb3O54879 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Gm8493-201ENSMUST00000196881 489 ntBASIC14.32□□□□□ -0.12
Hmgb3O54879 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC14.32□□□□□ -0.12
Hmgb3O54879 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Gm20628-201ENSMUST00000177363 3215 ntBASIC14.32□□□□□ -0.12
Hmgb3O54879 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Hmgb3O54879 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC14.31□□□□□ -0.12
Hmgb3O54879 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC14.31□□□□□ -0.12
Hmgb3O54879 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Hmgb3O54879 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC14.31□□□□□ -0.12
Hmgb3O54879 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC14.31□□□□□ -0.12
Hmgb3O54879 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Wdr70-203ENSMUST00000227371 1130 ntBASIC14.31□□□□□ -0.12
Hmgb3O54879 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.31□□□□□ -0.12
Hmgb3O54879 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Hmgb3O54879 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Gm43173-201ENSMUST00000202246 593 ntBASIC14.3□□□□□ -0.12
Hmgb3O54879 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Hmgb3O54879 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Hmgb3O54879 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC14.3□□□□□ -0.12
Hmgb3O54879 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Hmgb3O54879 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Hmgb3O54879 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Hmgb3O54879 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Hmgb3O54879 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms