Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.75■□□□□ 0.43
Sdc4O35988 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.75■□□□□ 0.43
Sdc4O35988 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sdc4O35988 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Sdc4O35988 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sdc4O35988 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sdc4O35988 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Sdc4O35988 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Sdc4O35988 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.74■□□□□ 0.43
Sdc4O35988 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
Sdc4O35988 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.74■□□□□ 0.43
Sdc4O35988 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Sdc4O35988 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
Sdc4O35988 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.73■□□□□ 0.43
Sdc4O35988 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Sdc4O35988 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.73■□□□□ 0.43
Sdc4O35988 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Sdc4O35988 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.72■□□□□ 0.43
Sdc4O35988 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.72■□□□□ 0.43
Sdc4O35988 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.72■□□□□ 0.43
Sdc4O35988 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 AA414768-201ENSMUST00000121924 1257 ntBASIC17.72■□□□□ 0.43
Sdc4O35988 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Gm27389-201ENSMUST00000183622 195 ntBASIC17.72■□□□□ 0.43
Sdc4O35988 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.72■□□□□ 0.43
Sdc4O35988 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Sdc4O35988 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Sdc4O35988 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Sdc4O35988 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.71■□□□□ 0.43
Sdc4O35988 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Sdc4O35988 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Mir1668-201ENSMUST00000184114 107 ntBASIC17.71■□□□□ 0.43
Sdc4O35988 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Sdc4O35988 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Sdc4O35988 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Sdc4O35988 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.7■□□□□ 0.42
Sdc4O35988 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Gm6728-201ENSMUST00000178117 1065 ntBASIC17.7■□□□□ 0.42
Sdc4O35988 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.7■□□□□ 0.42
Sdc4O35988 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Sdc4O35988 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Sdc4O35988 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sdc4O35988 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms