Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trav13d-3J3QMG8 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trav13d-3J3QMG8 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Gm715-201ENSMUST00000117865 831 ntBASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trav13d-3J3QMG8 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Gm37025-201ENSMUST00000195159 829 ntBASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trav13d-3J3QMG8 Shroom3-211ENSMUST00000225438 5742 ntBASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Gm38027-201ENSMUST00000192315 235 ntBASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trav13d-3J3QMG8 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Tfap2a-209ENSMUST00000225180 1828 ntBASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trav13d-3J3QMG8 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trav13d-3J3QMG8 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms