Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Ddb1Q3U1J4 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Ddb1Q3U1J4 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Ddb1Q3U1J4 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
Ddb1Q3U1J4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
Ddb1Q3U1J4 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Ddb1Q3U1J4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Ddb1Q3U1J4 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
Ddb1Q3U1J4 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
Ddb1Q3U1J4 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Ddb1Q3U1J4 Scarna2-201ENSMUST00000157560 414 ntBASIC31.54■■■□□ 2.64
Ddb1Q3U1J4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Ddb1Q3U1J4 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
Ddb1Q3U1J4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
Ddb1Q3U1J4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Gm12366-201ENSMUST00000121722 873 ntBASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Gm30023-201ENSMUST00000197970 889 ntBASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Gm5786-201ENSMUST00000085368 882 ntBASIC31.52■■■□□ 2.64
Ddb1Q3U1J4 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Ddb1Q3U1J4 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Ddb1Q3U1J4 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Ddb1Q3U1J4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC31.49■■■□□ 2.63
Ddb1Q3U1J4 Gm11687-201ENSMUST00000118911 886 ntBASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
Ddb1Q3U1J4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Ddb1Q3U1J4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
Ddb1Q3U1J4 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Ddb1Q3U1J4 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Ddb1Q3U1J4 Gm9806-201ENSMUST00000051080 552 ntBASIC31.45■■■□□ 2.63
Ddb1Q3U1J4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Ddb1Q3U1J4 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
Ddb1Q3U1J4 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Ddb1Q3U1J4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
Ddb1Q3U1J4 Gm4799-201ENSMUST00000095396 657 ntBASIC31.41■■■□□ 2.62
Ddb1Q3U1J4 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC31.4■■■□□ 2.62
Ddb1Q3U1J4 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Ddb1Q3U1J4 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC31.39■■■□□ 2.62
Ddb1Q3U1J4 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
Ddb1Q3U1J4 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC31.37■■■□□ 2.61
Ddb1Q3U1J4 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Ddb1Q3U1J4 Gm16437-201ENSMUST00000025669 507 ntBASIC31.36■■■□□ 2.61
Ddb1Q3U1J4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC31.33■■■□□ 2.61
Ddb1Q3U1J4 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ddb1Q3U1J4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC31.31■■■□□ 2.6
Ddb1Q3U1J4 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Ddb1Q3U1J4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Ddb1Q3U1J4 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC31.3■■■□□ 2.6
Ddb1Q3U1J4 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC31.29■■■□□ 2.6
Ddb1Q3U1J4 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
Ddb1Q3U1J4 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Pkd1-207ENSMUST00000228550 1050 ntBASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Ddb1Q3U1J4 Pcf11-205ENSMUST00000208255 1720 ntBASIC31.27■■■□□ 2.6
Ddb1Q3U1J4 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Ddb1Q3U1J4 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
Ddb1Q3U1J4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC31.22■■■□□ 2.59
Ddb1Q3U1J4 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Ddb1Q3U1J4 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ddb1Q3U1J4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
Ddb1Q3U1J4 Gm7332-201ENSMUST00000118351 454 ntBASIC31.21■■■□□ 2.59
Ddb1Q3U1J4 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Ddb1Q3U1J4 AC154454.1-201ENSMUST00000225253 216 ntBASIC31.2■■■□□ 2.59
Ddb1Q3U1J4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Ddb1Q3U1J4 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Ddb1Q3U1J4 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Ddb1Q3U1J4 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
Ddb1Q3U1J4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
Ddb1Q3U1J4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ddb1Q3U1J4 Gm27502-201ENSMUST00000183495 199 ntBASIC31.16■■■□□ 2.58
Ddb1Q3U1J4 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC31.16■■■□□ 2.58
Ddb1Q3U1J4 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Ddb1Q3U1J4 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
Ddb1Q3U1J4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Ddb1Q3U1J4 Mir3960-201ENSMUST00000198213 73 ntBASIC31.14■■■□□ 2.58
Ddb1Q3U1J4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ddb1Q3U1J4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
Ddb1Q3U1J4 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Ddb1Q3U1J4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms