Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pcdhgb8A0A140LI48 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdhgb8A0A140LI48 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdhgb8A0A140LI48 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.25■□□□□ 0.99
Pcdhgb8A0A140LI48 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdhgb8A0A140LI48 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Pcdhgb8A0A140LI48 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdhgb8A0A140LI48 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdhgb8A0A140LI48 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdhgb8A0A140LI48 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdhgb8A0A140LI48 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdhgb8A0A140LI48 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdhgb8A0A140LI48 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Pcdhgb8A0A140LI48 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Pcdhgb8A0A140LI48 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdhgb8A0A140LI48 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdhgb8A0A140LI48 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdhgb8A0A140LI48 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdhgb8A0A140LI48 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.19■□□□□ 0.98
Pcdhgb8A0A140LI48 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdhgb8A0A140LI48 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdhgb8A0A140LI48 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.17■□□□□ 0.98
Pcdhgb8A0A140LI48 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdhgb8A0A140LI48 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pcdhgb8A0A140LI48 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdhgb8A0A140LI48 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.16■□□□□ 0.98
Pcdhgb8A0A140LI48 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC21.16■□□□□ 0.98
Pcdhgb8A0A140LI48 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Pcdhgb8A0A140LI48 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhgb8A0A140LI48 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhgb8A0A140LI48 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhgb8A0A140LI48 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhgb8A0A140LI48 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhgb8A0A140LI48 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhgb8A0A140LI48 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhgb8A0A140LI48 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhgb8A0A140LI48 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhgb8A0A140LI48 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhgb8A0A140LI48 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhgb8A0A140LI48 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Pcdhgb8A0A140LI48 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhgb8A0A140LI48 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhgb8A0A140LI48 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhgb8A0A140LI48 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhgb8A0A140LI48 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhgb8A0A140LI48 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhgb8A0A140LI48 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Pcdhgb8A0A140LI48 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pcdhgb8A0A140LI48 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdhgb8A0A140LI48 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdhgb8A0A140LI48 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdhgb8A0A140LI48 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdhgb8A0A140LI48 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.06■□□□□ 0.96
Pcdhgb8A0A140LI48 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdhgb8A0A140LI48 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhgb8A0A140LI48 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Pcdhgb8A0A140LI48 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Pcdhgb8A0A140LI48 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
Pcdhgb8A0A140LI48 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Pcdhgb8A0A140LI48 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Pcdhgb8A0A140LI48 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdhgb8A0A140LI48 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdhgb8A0A140LI48 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdhgb8A0A140LI48 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Pcdhgb8A0A140LI48 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Pcdhgb8A0A140LI48 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms