Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Gm23583-201ENSMUST00000158533 289 ntBASIC3.18□□□□□ -1.9
Usp28Q5I043 Prl3d2-202ENSMUST00000164964 675 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
Usp28Q5I043 Gm17166-201ENSMUST00000172006 431 ntBASIC3.18□□□□□ -1.9
Usp28Q5I043 Pid1-206ENSMUST00000176822 1119 ntTSL 2 BASIC3.18□□□□□ -1.9
Usp28Q5I043 Mrgprb1-202ENSMUST00000188095 472 ntTSL 3 BASIC3.18□□□□□ -1.9
Usp28Q5I043 Trav12-4-201ENSMUST00000200663 271 ntBASIC3.18□□□□□ -1.9
Usp28Q5I043 Gm44072-201ENSMUST00000203666 383 ntTSL 3 BASIC3.18□□□□□ -1.9
Usp28Q5I043 Gm9370-201ENSMUST00000222787 609 ntBASIC3.18□□□□□ -1.9
Usp28Q5I043 Tug1-201ENSMUST00000132077 6719 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
Usp28Q5I043 AC124561.2-201ENSMUST00000226657 1973 ntBASIC3.18□□□□□ -1.9
Usp28Q5I043 Pak3-203ENSMUST00000112864 8612 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm29968-201ENSMUST00000222815 1387 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm22115-201ENSMUST00000103976 133 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm23923-201ENSMUST00000104108 133 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Olfr1165-ps-201ENSMUST00000117860 950 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Klrd1-203ENSMUST00000119520 919 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm14591-201ENSMUST00000120407 518 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm14804-201ENSMUST00000122322 508 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Prl2c5-202ENSMUST00000126540 971 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm11583-201ENSMUST00000132296 466 ntTSL 5 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm16331-201ENSMUST00000144274 498 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm25981-201ENSMUST00000157921 295 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Krtap27-1-201ENSMUST00000165580 646 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm17727-201ENSMUST00000171898 643 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm18397-201ENSMUST00000176704 587 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm24969-201ENSMUST00000180331 79 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Mir6907-201ENSMUST00000183764 71 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28298-201ENSMUST00000185287 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28127-201ENSMUST00000185293 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28176-201ENSMUST00000185322 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm29581-201ENSMUST00000186083 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm29210-201ENSMUST00000186332 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28761-201ENSMUST00000186540 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28170-201ENSMUST00000186892 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28073-201ENSMUST00000187174 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28725-201ENSMUST00000187372 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm29655-201ENSMUST00000187728 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28280-201ENSMUST00000188196 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28091-201ENSMUST00000188421 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Scgb2b16-ps-201ENSMUST00000188720 333 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28697-202ENSMUST00000188821 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28521-201ENSMUST00000188948 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28850-201ENSMUST00000189058 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28300-202ENSMUST00000189170 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28358-202ENSMUST00000189292 223 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28690-202ENSMUST00000190325 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28456-202ENSMUST00000190521 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm28325-202ENSMUST00000191481 622 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm42516-201ENSMUST00000198691 767 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm44404-201ENSMUST00000203979 636 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm7726-201ENSMUST00000206241 231 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm46234-201ENSMUST00000218702 259 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Gnrh1-202ENSMUST00000223929 428 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 AC156574.2-201ENSMUST00000228023 282 ntBASIC3.17□□□□□ -1.9
Usp28Q5I043 Olfr745-201ENSMUST00000062534 1175 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Scgb1b2-201ENSMUST00000080635 424 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Olfr992-201ENSMUST00000099927 930 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Vmn2r67-201ENSMUST00000168730 2556 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Olfr839-ps1-201ENSMUST00000212127 7759 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Crisp3-201ENSMUST00000026499 1417 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
Usp28Q5I043 Vmn1r80-205ENSMUST00000227755 10455 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
Usp28Q5I043 Hsf3-205ENSMUST00000179832 1972 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm23911-201ENSMUST00000104596 134 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm3940-201ENSMUST00000105087 432 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Hmgb1-rs18-201ENSMUST00000117940 627 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm11285-201ENSMUST00000118443 322 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 DQ267100-201ENSMUST00000122600 72 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Olfr1234-203ENSMUST00000137692 3827 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Far1os-201ENSMUST00000138253 893 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 C330018D20Rik-202ENSMUST00000139243 726 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Mup-ps4-201ENSMUST00000151005 539 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm26088-201ENSMUST00000157896 131 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm22330-201ENSMUST00000158068 115 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm9613-201ENSMUST00000171662 196 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Snord53-201ENSMUST00000175146 78 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Vmn1r-ps146-201ENSMUST00000176131 525 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm26713-201ENSMUST00000181827 627 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 1700067G17Rik-201ENSMUST00000186180 603 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm44395-201ENSMUST00000197056 153 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gtpbp4-ps6-201ENSMUST00000198160 292 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm43992-201ENSMUST00000204358 197 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm7443-201ENSMUST00000206355 378 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 AC168266.1-201ENSMUST00000216024 226 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm45965-201ENSMUST00000221192 1284 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Gm17872-201ENSMUST00000222550 532 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 AC155314.1-201ENSMUST00000227624 508 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Spata4-201ENSMUST00000033917 1057 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 Tas2r139-201ENSMUST00000057686 960 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Tas2r118-201ENSMUST00000062463 900 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Olfr1204-201ENSMUST00000078631 930 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Olfr427-201ENSMUST00000080831 948 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Rps15a-ps2-201ENSMUST00000087473 393 ntBASIC3.16□□□□□ -1.9
Usp28Q5I043 Olfr1282-201ENSMUST00000099618 918 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
Usp28Q5I043 Mctp1-202ENSMUST00000109589 1653 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
Usp28Q5I043 Ctdspl2-202ENSMUST00000110572 4160 ntTSL 5 BASIC3.15□□□□□ -1.9
Usp28Q5I043 Gm42785-201ENSMUST00000202316 3835 ntBASIC3.15□□□□□ -1.9
Usp28Q5I043 Btbd35f3-201ENSMUST00000140300 1943 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
Usp28Q5I043 Olfr146-203ENSMUST00000214410 1651 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
Usp28Q5I043 Gm13103-201ENSMUST00000094522 1833 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 97.5 ms