Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Gm13158-201ENSMUST00000122007 736 ntBASIC16.55■□□□□ 0.24
Lsm1Q8VC85 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Lsm1Q8VC85 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Tfap2a-209ENSMUST00000225180 1828 ntBASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Lsm1Q8VC85 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Gm27275-201ENSMUST00000184318 272 ntBASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Gm18025-201ENSMUST00000221733 862 ntBASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Lsm1Q8VC85 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.52■□□□□ 0.24
Lsm1Q8VC85 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Lsm1Q8VC85 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Lsm1Q8VC85 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Lsm1Q8VC85 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms