Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Gm11841-201ENSMUST00000117060 1963 ntBASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ccdc9Q8VC31 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Ccdc9Q8VC31 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Gm37912-201ENSMUST00000191895 3076 ntBASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ccdc9Q8VC31 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ccdc9Q8VC31 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ccdc9Q8VC31 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ccdc9Q8VC31 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ccdc9Q8VC31 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ccdc9Q8VC31 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Gm45546-201ENSMUST00000211053 2394 ntBASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms