Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Gm8668-201ENSMUST00000120559 1447 ntBASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.09■□□□□ 0.81
Vps53Q8CCB4 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vps53Q8CCB4 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps53Q8CCB4 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps53Q8CCB4 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Gm16042-201ENSMUST00000204813 1247 ntBASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Gm18025-201ENSMUST00000221733 862 ntBASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Vps53Q8CCB4 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.06■□□□□ 0.8
Vps53Q8CCB4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Gm15375-201ENSMUST00000119510 849 ntBASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.05■□□□□ 0.8
Vps53Q8CCB4 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps53Q8CCB4 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms