Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Gm7370-201ENSMUST00000219471 767 ntBASIC20.38■□□□□ 0.85
Trim56Q80VI1 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trim56Q80VI1 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC20.37■□□□□ 0.85
Trim56Q80VI1 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trim56Q80VI1 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.36■□□□□ 0.85
Trim56Q80VI1 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.36■□□□□ 0.85
Trim56Q80VI1 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.36■□□□□ 0.85
Trim56Q80VI1 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.36■□□□□ 0.85
Trim56Q80VI1 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Gm13836-201ENSMUST00000121159 501 ntBASIC20.35■□□□□ 0.85
Trim56Q80VI1 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Gm2274-201ENSMUST00000184539 609 ntBASIC20.35■□□□□ 0.85
Trim56Q80VI1 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trim56Q80VI1 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Trim56Q80VI1 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Trim56Q80VI1 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim56Q80VI1 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim56Q80VI1 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim56Q80VI1 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Trim56Q80VI1 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC20.33■□□□□ 0.85
Trim56Q80VI1 Gm18959-201ENSMUST00000208954 655 ntBASIC20.33■□□□□ 0.85
Trim56Q80VI1 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trim56Q80VI1 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms