Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC11.77□□□□□ -0.52
Trav3-1Q5R1I8 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Trav3-1Q5R1I8 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Trav3-1Q5R1I8 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Ccdc166-201ENSMUST00000182172 2584 ntBASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Gm37019-201ENSMUST00000192133 2134 ntBASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Trav3-1Q5R1I8 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 AC117769.4-201ENSMUST00000225679 685 ntBASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Gm43352-201ENSMUST00000196419 3065 ntBASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Trav3-1Q5R1I8 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 100.1 ms