Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Usp28Q5I043 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Usp28Q5I043 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC19.6■□□□□ 0.73
Usp28Q5I043 Gm37292-201ENSMUST00000192062 758 ntBASIC19.6■□□□□ 0.73
Usp28Q5I043 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Usp28Q5I043 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Usp28Q5I043 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Usp28Q5I043 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Usp28Q5I043 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Gm45412-201ENSMUST00000210217 2275 ntBASIC19.59■□□□□ 0.73
Usp28Q5I043 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Usp28Q5I043 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.59■□□□□ 0.73
Usp28Q5I043 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Usp28Q5I043 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Usp28Q5I043 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.58■□□□□ 0.73
Usp28Q5I043 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
Usp28Q5I043 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Usp28Q5I043 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.58■□□□□ 0.72
Usp28Q5I043 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp28Q5I043 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Usp28Q5I043 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Usp28Q5I043 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp28Q5I043 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Usp28Q5I043 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.57■□□□□ 0.72
Usp28Q5I043 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.57■□□□□ 0.72
Usp28Q5I043 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.57■□□□□ 0.72
Usp28Q5I043 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Usp28Q5I043 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Usp28Q5I043 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
Usp28Q5I043 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Usp28Q5I043 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Usp28Q5I043 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.55■□□□□ 0.72
Usp28Q5I043 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.55■□□□□ 0.72
Usp28Q5I043 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Usp28Q5I043 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Usp28Q5I043 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.55■□□□□ 0.72
Usp28Q5I043 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms