Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf3aQ3ULJ3 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3aQ3ULJ3 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3aQ3ULJ3 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Upf3aQ3ULJ3 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Gm7461-201ENSMUST00000058918 827 ntBASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf3aQ3ULJ3 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
Upf3aQ3ULJ3 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Olfr129-201ENSMUST00000122318 993 ntBASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf3aQ3ULJ3 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Ighv6-1-201ENSMUST00000193612 343 ntBASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Upf3aQ3ULJ3 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf3aQ3ULJ3 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms