Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.56■□□□□ 0.88
Smarce1O54941 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Smarce1O54941 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarce1O54941 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Smarce1O54941 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smarce1O54941 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Smarce1O54941 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC20.55■□□□□ 0.88
Smarce1O54941 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.55■□□□□ 0.88
Smarce1O54941 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.55■□□□□ 0.88
Smarce1O54941 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarce1O54941 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC20.54■□□□□ 0.88
Smarce1O54941 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Smarce1O54941 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Gm15375-201ENSMUST00000119510 849 ntBASIC20.54■□□□□ 0.88
Smarce1O54941 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Smarce1O54941 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.54■□□□□ 0.88
Smarce1O54941 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smarce1O54941 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Smarce1O54941 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.53■□□□□ 0.88
Smarce1O54941 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Gm15743-202ENSMUST00000182690 1901 ntBASIC20.53■□□□□ 0.88
Smarce1O54941 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.53■□□□□ 0.88
Smarce1O54941 Gm7292-201ENSMUST00000194706 2527 ntBASIC20.53■□□□□ 0.88
Smarce1O54941 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Smarce1O54941 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.53■□□□□ 0.88
Smarce1O54941 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Smarce1O54941 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
Smarce1O54941 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smarce1O54941 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarce1O54941 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarce1O54941 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smarce1O54941 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
Smarce1O54941 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smarce1O54941 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.51■□□□□ 0.87
Smarce1O54941 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Smarce1O54941 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.51■□□□□ 0.87
Smarce1O54941 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smarce1O54941 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.5■□□□□ 0.87
Smarce1O54941 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
Smarce1O54941 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC20.5■□□□□ 0.87
Smarce1O54941 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Smarce1O54941 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smarce1O54941 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarce1O54941 Gm6576-201ENSMUST00000169678 883 ntBASIC20.49■□□□□ 0.87
Smarce1O54941 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.49■□□□□ 0.87
Smarce1O54941 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.49■□□□□ 0.87
Smarce1O54941 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smarce1O54941 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms