Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim55G3X8Y1 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim55G3X8Y1 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim55G3X8Y1 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim55G3X8Y1 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim55G3X8Y1 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim55G3X8Y1 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.77■□□□□ 0.43
Trim55G3X8Y1 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim55G3X8Y1 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.75■□□□□ 0.43
Trim55G3X8Y1 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim55G3X8Y1 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Gm13216-201ENSMUST00000117145 591 ntBASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms