Protein–RNA interactions for Protein: A2ASI5

Scn3a, Sodium channel protein, mousemouse

Predictions only

Length 1,947 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn3aA2ASI5 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn3aA2ASI5 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Gm11336-201ENSMUST00000118168 334 ntBASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn3aA2ASI5 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Scn3aA2ASI5 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn3aA2ASI5 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn3aA2ASI5 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn3aA2ASI5 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Zcchc6-207ENSMUST00000225576 2499 ntBASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.24■□□□□ 0.67
Scn3aA2ASI5 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Gm13186-201ENSMUST00000118031 316 ntBASIC19.23■□□□□ 0.67
Scn3aA2ASI5 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn3aA2ASI5 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms