Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
H2afb1S4R1E0 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
H2afb1S4R1E0 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
H2afb1S4R1E0 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Gm10418-201ENSMUST00000100943 576 ntBASIC15.7■□□□□ 0.1
H2afb1S4R1E0 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Mir5133-201ENSMUST00000174955 77 ntBASIC15.7■□□□□ 0.1
H2afb1S4R1E0 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Zfp783-201ENSMUST00000095946 670 ntBASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
H2afb1S4R1E0 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
H2afb1S4R1E0 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Gm42918-201ENSMUST00000199249 1580 ntBASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
H2afb1S4R1E0 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 AC108858.1-201ENSMUST00000228461 1498 ntBASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Gm27405-201ENSMUST00000184201 112 ntBASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Gm29791-202ENSMUST00000207888 369 ntBASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
H2afb1S4R1E0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms