Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Prpf40aQ9R1C7 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Prpf40aQ9R1C7 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
Prpf40aQ9R1C7 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Prpf40aQ9R1C7 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Gm12382-201ENSMUST00000122005 922 ntBASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Gm37292-201ENSMUST00000192062 758 ntBASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Gm10812-201ENSMUST00000099864 546 ntBASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Prpf40aQ9R1C7 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Gm43183-201ENSMUST00000200632 547 ntBASIC19■□□□□ 0.63
Prpf40aQ9R1C7 AC154649.1-201ENSMUST00000227392 384 ntBASIC19■□□□□ 0.63
Prpf40aQ9R1C7 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Prpf40aQ9R1C7 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Prpf40aQ9R1C7 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Gm6576-201ENSMUST00000169678 883 ntBASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Prpf40aQ9R1C7 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms