Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cdc40Q9DC48 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Gm29994-201ENSMUST00000195495 1193 ntBASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Gm9987-201ENSMUST00000069768 567 ntBASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cdc40Q9DC48 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Mir2861-201ENSMUST00000175539 82 ntBASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cdc40Q9DC48 Idnk-204ENSMUST00000226010 1898 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Mir6349-201ENSMUST00000184059 97 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Gm29791-202ENSMUST00000207888 369 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Arhgef4-208ENSMUST00000211073 171 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 AC156016.1-201ENSMUST00000227190 1035 ntBASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Cdc40Q9DC48 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms