Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Syne4Q8CII8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Syne4Q8CII8 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Syne4Q8CII8 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Syne4Q8CII8 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Syne4Q8CII8 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Syne4Q8CII8 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Syne4Q8CII8 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Syne4Q8CII8 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Syne4Q8CII8 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Fst-202ENSMUST00000223640 2612 ntBASIC19.57■□□□□ 0.72
Syne4Q8CII8 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.57■□□□□ 0.72
Syne4Q8CII8 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Idnk-204ENSMUST00000226010 1898 ntBASIC19.57■□□□□ 0.72
Syne4Q8CII8 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 AW822252-206ENSMUST00000208904 237 ntBASIC19.57■□□□□ 0.72
Syne4Q8CII8 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Syne4Q8CII8 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.56■□□□□ 0.72
Syne4Q8CII8 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Syne4Q8CII8 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.55■□□□□ 0.72
Syne4Q8CII8 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Syne4Q8CII8 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Gm11452-201ENSMUST00000122376 690 ntBASIC19.54■□□□□ 0.72
Syne4Q8CII8 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Syne4Q8CII8 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Syne4Q8CII8 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.53■□□□□ 0.72
Syne4Q8CII8 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Syne4Q8CII8 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Syne4Q8CII8 Gm11336-201ENSMUST00000118168 334 ntBASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms