Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trim56Q80VI1 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.44■□□□□ 0.86
Trim56Q80VI1 AC120002.2-201ENSMUST00000220205 773 ntBASIC20.44■□□□□ 0.86
Trim56Q80VI1 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trim56Q80VI1 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.43■□□□□ 0.86
Trim56Q80VI1 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Trim56Q80VI1 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trim56Q80VI1 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Trim56Q80VI1 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC20.41■□□□□ 0.86
Trim56Q80VI1 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.41■□□□□ 0.86
Trim56Q80VI1 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trim56Q80VI1 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 AC159205.6-201ENSMUST00000224935 887 ntBASIC20.4■□□□□ 0.86
Trim56Q80VI1 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Trim56Q80VI1 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim56Q80VI1 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trim56Q80VI1 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gm10231-201ENSMUST00000181584 441 ntBASIC20.39■□□□□ 0.85
Trim56Q80VI1 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gm10175-202ENSMUST00000208752 441 ntBASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Trim56Q80VI1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms