Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Gm5417-201ENSMUST00000079706 384 ntBASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarca1Q6PGB8 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Smarca1Q6PGB8 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smarca1Q6PGB8 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.23■□□□□ 0.67
Smarca1Q6PGB8 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Smarca1Q6PGB8 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Smarca1Q6PGB8 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Smarca1Q6PGB8 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms